MmuEX0011513 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113670708-113675789:+
Coord C1 exon
chr9:113670708-113670786
Coord A exon
chr9:113675042-113675166
Coord C2 exon
chr9:113675686-113675789
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTATTGTGACAGGTT
3' ss Score
9.33
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTATCGTTGTTAGGATTGGAGATTTTAAGTGCCTTTGTGGATAGATTGTCAACACGATTCAAATCTTATGTAACAATGG
Seq A exon
GTTCTCTGTATATAATCCAGGCTAGCCTGGTCTCAGTCCTGCTGACTGAGCCTCCCCAGTGCTGGAATTAAAGCATGCACTTCCATACCTGGCTTGAAGGCTTTTTCCCCTTGATTACACCTTCT
Seq C2 exon
TTACCACAGCTTTAATAGACAGAATGGGAGATGTCAAAGACAAAGTTCGAGAAGAAGCTCAGAACCTGACACTGAAGCTGATGGATGAGGTGGCGCCGCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(15.8=100)
A:
NO
C2:
PF123483=CLASP_N=FE(20.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCGTTGTTAGGATTGGAGATTT
R:
GCCACCTCATCCATCAGCTTC
Band lengths:
173-298
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: