MmuEX0011515 @ mm9
Exon Skipping
Gene
ENSMUSG00000033392 | Clasp2
Description
CLIP associating protein 2 [Source:MGI Symbol;Acc:MGI:1923749]
Coordinates
chr9:113763291-113771405:+
Coord C1 exon
chr9:113763291-113763464
Coord A exon
chr9:113769238-113769255
Coord C2 exon
chr9:113771304-113771405
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTTCTCTTATTTAGGAA
3' ss Score
10.95
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TATCTGTGGGAGGCAGCAAAGCCAACCCCCTTCCAGGAAGCCTGCAGCGTTCTCGAAGTGACATTGATGTGAATGCGGCAGCTGGTGCCAAGGCTCATCATGCTGCTGGGCAGGCGGTGCGAAGTGGGCGCTTAGGTGCAGGTGCCCTGAACCCAGGCTCCTATGCATCACTAG
Seq A exon
GAACAGCATCTGATGATG
Seq C2 exon
GTCGGGTGAGAGCCAAGCTTTCTACACCGCTTGTTGCTGTGGGAAATGCCAAGACCGACTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033392-'25-27,'25-26,27-27
Average complexity
C1
Mappability confidence:
100%=80=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGGCTCCTATGCATCA
R:
TTGTCCGGCTTCTCCCTCTAG
Band lengths:
106-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: