BtaEX0009128 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7870066-7874333:-
Coord C1 exon
chr22:7874310-7874333
Coord A exon
chr22:7872252-7872269
Coord C2 exon
chr22:7870066-7870167
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTTCTCTTATTTAGGAA
3' ss Score
10.95
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGGATACTTCTGACAAGATGGATG
Seq A exon
GAACAGCATCTGAAGATG
Seq C2 exon
GCCGGGTGAGAGCAAAGCTTTCAGCACCACTTGCTAGTATGGGAAATGCCAAGACAGATTCCAGAGGAAGAAGTCGAACAAAGATGGTGTCTCAGTCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-'30-30,'30-28,31-30
Average complexity
C2
Mappability confidence:
100%=100=60%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development