BtaEX0009127 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7872252-7882319:-
Coord C1 exon
chr22:7882146-7882319
Coord A exon
chr22:7874310-7874333
Coord C2 exon
chr22:7872252-7872269
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTCTTTCATCAAAGAGG
3' ss Score
3.34
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TATCAGCAGGCAGCAGCAAAGCCAGCTCTCTTCCTGGAAGCCTGCAGCGTTCACGAAGTGACATTGATGTGAATGCTGCTGCTGGTGCCAAGGCACATCATGCTGCCGGACAAGCTGTGCGAAGTGGCCGGTTAGGTGCAGGGGCCCTGAATCCAGGTTCCTATGCATCACTAG
Seq A exon
AGGATACTTCTGACAAGATGGATG
Seq C2 exon
GAACAGCATCTGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333-'29-28,'29-26,30-28
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development