RnoEX0021485 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122115123-122120911:+
Coord C1 exon
chr8:122115123-122115296
Coord A exon
chr8:122119369-122119390
Coord C2 exon
chr8:122120894-122120911
Length
22 bp
Sequences
Splice sites
3' ss Seq
CTTGCTCTTTCATCAAAGAGGAC
3' ss Score
-8.07
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TGTCGGTGGGAGGCAGCAAAGCCAGCCCCCTTCCAGGAAGCCTGCAGCGCTCTCGAAGTGACATTGACGTGAATGCCGCCGCCGGTGCCAAGGCGCATCATGCTGCTGGACAGGCTGTGCGAAGTGGGCGTTTAGGCGCAGGTGCCCTGAATCCAGGTTCCTATGCATCACTAG
Seq A exon
GACACTTCTGACAAGATGGATG
Seq C2 exon
GAACAGCATCTGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'35-33,'35-32,36-33
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]