RnoEX0021486 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122119367-122123152:+
Coord C1 exon
chr8:122119367-122119390
Coord A exon
chr8:122120894-122120911
Coord C2 exon
chr8:122123051-122123152
Length
18 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTTCTCTTATTTAGGAA
3' ss Score
10.95
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
AGGACACTTCTGACAAGATGGATG
Seq A exon
GAACAGCATCTGAAGATG
Seq C2 exon
GTCGGGTGAGAGCCAAGCTTTCTACACCACTTGTTGCTGTGGGAAATGCCAAGACCGATTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-'36-34,'36-33,37-34
Average complexity
C1
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACTTCTGACAAGATGGA
R:
TTGTCCGGCTTCTCCCTCTAG
Band lengths:
105-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]