DreEX0021946 @ danRer10
Exon Skipping
Gene
ENSDARG00000020345 | clasp2
Description
cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
Coordinates
chr19:43185445-43189233:+
Coord C1 exon
chr19:43185445-43185609
Coord A exon
chr19:43186557-43186577
Coord C2 exon
chr19:43189129-43189233
Length
21 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCTGGCTTAAGATG
3' ss Score
5.54
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
TTCCTGCGGGCTCAAAATCTTCTGGATCTCCAGCCTCGCTGCAGCGCTCCCGCAGTGATGTGGATGTCAACGCTGCCGCCGGTGCTAAAGCCAGACACAGTGGCCAGGCTGGAGGAGCCGGCAGAGTCACCACAGGCCTGACCCCTGGATCATACGCTTCTCTCG
Seq A exon
ATGATGCCTCTGATAAGGATG
Seq C2 exon
GGCGGCTACGGACTAAGCAGACTTTATCCACAGCTTCCAGTGTGGGCAGCAGTCAGGTAGACTCCAGAGGCCGGACCAGATCCAAGATGGCGTCCCAGTCACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020345_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000136873fB1951
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTAAAGCCAGACACAGT
R:
AGTCTGCTTAGTCCGTAGCCG
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]