GgaEX0017980 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44746720-44754124:-
Coord C1 exon
chr2:44753954-44754124
Coord A exon
chr2:44751280-44751303
Coord C2 exon
chr2:44746720-44746821
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCCTGCTTTTTCAACAAAGAGG
3' ss Score
2.1
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
TTTCGGGCAGCAGCAAGAGTGTTCCAAGCCCAGGAACTCTGCAAAGGTCTCGCAGTGACATTGATGTTAATGCTGCTGCAGGGGCAAAGGCCCGCCATGCTTCTGGACAGACAGCTGGAGGTGGGCGCTTGTCAGCAGCTGGTCTGCCTCCAGGATCTTATGCTTCACTAG
Seq A exon
AGGATACTTCTGACAAGATGGATG
Seq C2 exon
GTCGTATACGAACAAAGCTTTCAACACCTTCTCTTGGCATTGGAAATTCTAAAACAGATTCCAGAGGACGGAGTAGAACCAAAGTGGTCTCTCAGTCTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995_CASSETTE3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTGCCTCCAGGATCTT
R:
TGGTTCTACTCCGTCCTCTGG
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]