GgaEX0017559 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25648596-25657162:-
Coord C1 exon
chr7:25656992-25657162
Coord A exon
chr7:25655335-25655358
Coord C2 exon
chr7:25648596-25648703
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATTTGCTTAAAGATG
3' ss Score
5.3
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CATCTACAGTAAGTACAAAATCTGTGTCAACACCAGGATCTCTGCAGCGATCCCGCAGTGACGTTGATGTGAATGCAGCAGCTAGTGCCAAGTCAAAAGTGACATCTTCTGGAGCATCCACCCCCTTCAGTTCTGCTGCAGCCCTGCCCCCAGGCTCATATGCATCACTAG
Seq A exon
ATGGTACTACCACTAAAACTGAGG
Seq C2 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019030fB2066
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCACCCCCTTCAGTTCTG
R:
GTGTTGAGGTGACGCTGGTAG
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]