GgaEX0017559 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27722753-27731319:-
Coord C1 exon
chr7:27731149-27731319
Coord A exon
chr7:27729492-27729515
Coord C2 exon
chr7:27722753-27722860
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTAATTTGCTTAAAGATG
3' ss Score
5.3
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
CATCTACAGTAAGTACAAAATCTGTGTCAACACCAGGATCTCTGCAGCGATCCCGCAGTGACGTTGATGTGAATGCAGCAGCTAGTGCCAAGTCAAAAGTGACATCTTCTGGAGCATCCACCCCCTTCAGTTCTGCTGCAGCCCTGCCCCCAGGCTCATATGCATCACTAG
Seq A exon
ATGGTACTACCACTAAAACTGAGG
Seq C2 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE6
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCACCCCCTTCAGTTCTG
R:
GTGTTGAGGTGACGCTGGTAG
Band lengths:
114-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]