DreEX0002807 @ danRer10
Exon Skipping
Gene
ENSDARG00000104358 | CLASP1 (2 of 2)
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr11:43775403-43781124:-
Coord C1 exon
chr11:43780954-43781124
Coord A exon
chr11:43777469-43777504
Coord C2 exon
chr11:43775403-43775510
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTTATCTGCTCAAAGACG
3' ss Score
4.4
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTAAAGTTACGAGTGCCGGCTCGTGCTCCTCATCCGGAAGTCTTCAGCGTTCTCGCAGTGATGTGGATGTGAACGCTGCAGTCTGTGCCAAATCCCGGATGCCTGCCGTGCCCACTGCTGCCCCCTTCAGCTCCGCCACTGCACTGCCGCCCGGATCCTACGCCTCGCTGG
Seq A exon
ACGCTGCCGGTAATGTGGAGGGTAAGCGAAGTGTGG
Seq C2 exon
GTCGAGTGCGCACCAGACGCCAGAGTTCAGAGACGCCGACTGGAGGTGGAGCGTCTGTGACTGACAGCAGGGGGCGGAGTCGAGCCAAAGCTGCCTCCCAATCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104358_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000171910fB263
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGCCAAATCCCGGATG
R:
TCTCTGAACTCTGGCGTCTGG
Band lengths:
124-160
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]