Special

MmuEX0011498 @ mm10

Exon Skipping

Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118510206-118521934:+
Coord C1 exon
chr1:118510206-118510376
Coord A exon
chr1:118512175-118512222
Coord C2 exon
chr1:118521827-118521934
Length
48 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTTCCAAACTTCTAGAGT
3' ss Score
7.59
5' ss Seq
CAGGTACTA
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCTCTACAGTTAGTACCAAATCTGTGTCGACGACAGGATCTCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATCCTCAGGATCCCCCGCCTTCAGCTCTGCAGCAGCACTGCCCCCAGGATCCTATGCGTCCCTAG
Seq A exon
AGTCCAGACACATGAGGGAAGACTTGGAGTACGTAGGCCTGGATGCAG
Seq C2 exon
GTCGGATCCGCACGAGACGGCAGAGCTCGGGGAGCACCACCAATGTCGCCTCCACACCCTCCGACAGTCGGGGCCGCAGTCGCGCCAAAGTGGTTTCACAGTCTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302_MULTIEX3-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (disopred):
  C1=1.000 A=1.000 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000139526





     
                   









    
Main Skipping Isoform:
ENSMUSP00000042266





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000140167
          









    
Other Skipping Isoforms:
ENSMUSP00000067858, ENSMUSP00000128089, ENSMUSP00000137137, ENSMUSP00000139619, ENSMUSP00000140019, ENSMUSP00000140095, ENSMUSP00000140593, ENSMUSP00000140665, ENSMUSP00000140860, ENSMUSP00000141105, ENSMUSP00000142203
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr2:121445449-121445496 
ALTERNATIVE
HsaEX0015477
(CLASP1)
Human
(hg19)
chr2:122203025-122203072 
ALTERNATIVE
HsaEX0015477
(CLASP1)
Rat
(rn6)
chr13:34490888-34490935 
Cow
(bosTau6)
chr2:73585108-73585155 
ALTERNATIVE
BtaEX0009117
(CLASP1)
Chicken
(galGal4)
chr7:25655335-25655358 
ALTERNATIVE
GgaEX0017559
(CLASP1)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr11:43777469-43777504 
ALTERNATIVE
DreEX0002807
(CLASP1 (2 of 2))
Zebrafish
(danRer10)
chr9:38439451-38439474 
ALTERNATIVE
DreEX0021913
(clasp1a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CACTGCCCCCAGGATCCTATG

				
R: 
GACTGTGAAACCACTTTGGCG

				
Band lengths: 
133-181

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 1 annotated functions for this event 


PMID: 22749401
This event
It does NOT significantly modify interaction with YWHAG. By LUMIER.


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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