BtaEX0009117 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73584439-73586915:-
Coord C1 exon
chr2:73586745-73586915
Coord A exon
chr2:73585108-73585155
Coord C2 exon
chr2:73584439-73584462
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTTCCCAACTTCTAGAGT
3' ss Score
7.5
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CTTCCACGGTCAGCACCAAGTCTGCATCCACCGCGGGGTCCCTGCAGCGGTCTCGAAGCGACATCGATGTGAATGCAGCTGCCAGCGCCAAATCCAAGATCTCCTCGGCTGCCGGCACAGCACCCTTCAGCTCGGCGGCGGCCTTACCTCCGGGCTCGTATGCATCCTTAG
Seq A exon
AGTCCAAACACATGAGGGGAGACACGGAGCCCCTAGGCCTCGACTCAG
Seq C2 exon
ATGGTACTGCCACTAAAGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-'28-27,'28-26,29-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSBTAT00000031027fB1740
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCGAAGCGACATCGATG
R:
CTCCGCTTTAGTGGCAGTACC
Band lengths:
146-194
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development