DreEX0021913 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38437562-38441666:+
Coord C1 exon
chr9:38437562-38437732
Coord A exon
chr9:38439451-38439474
Coord C2 exon
chr9:38441559-38441666
Length
24 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTTTGCCCCAAAGATG
3' ss Score
7.19
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTAAAGTGATCGGCTCTCGGGTGTCCTCATCGTCTGGTTCCCTCCAGCGCTCTCGCAGTGACATTGACGTGAACGCAGCCTCCAGTGCCAAATCTCGCATGTCCACCGCAACCTCGCCATCCCCTTTCAGCGCAGCTGCAGCCCTGCCGCCAGGCTCCTATGCCTCTCTGG
Seq A exon
ATGGTGCTCCTGGTAAAATAGATG
Seq C2 exon
GTCGTGTTCGGACCAGAAGGCAGAGCTCAGGGAGTGCGGTAAGCGCCAACAGCACTGTGACAGACAGCCGTGGCCGAAGCAGAGCTAAAGTCGTGTCTCAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000172347fB1948
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGTGCCAAATCTCGCAT
R:
CTCTGCCTTCTGGTCCGAACA
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]