HsaEX0015477 @ hg19
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122187649-122205083:-
Coord C1 exon
chr2:122204913-122205083
Coord A exon
chr2:122203025-122203072
Coord C2 exon
chr2:122187649-122187753
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTTCCAAACTTCTAGAGT
3' ss Score
6.62
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTTCTACAGTTAGTACCAAATCTGTGTCAACGACTGGGTCCCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATCTTCGGGCACGACGCCTTTCAGCTCTGCAGCAGCTTTGCCTCCAGGGTCATACGCATCCTTAG
Seq A exon
AGTCCAGACACATGAGGGAAGACATGGAGTACATAGGCCTGGACTCAG
Seq C2 exon
GTCGGATCCGCACAAGACGGCAAAGCTCTGGGAGTGCCACCAACGTCGCCTCTACACCTGATAACCGGGGCCGCAGTCGCGCTAAAGTGGTTTCACAGTCCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[97=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF123333=Ipi1_N=PD(11.0=31.6)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCCTCCAGGGTCATAC
R:
GCTGGGACTGTGAAACCACTT
Band lengths:
136-184
Functional annotations
There are 1 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)