HsaINT0035713 @ hg19
Intron Retention
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122202515-122205083:-
Coord C1 exon
chr2:122204913-122205083
Coord A exon
chr2:122202539-122204912
Coord C2 exon
chr2:122202515-122202538
Length
2374 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACC
5' ss Score
6.66
3' ss Seq
GTTTTTTAATTTGCTTAAAGATG
3' ss Score
4.53
Exon sequences
Seq C1 exon
CTTCTACAGTTAGTACCAAATCTGTGTCAACGACTGGGTCCCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATCTTCGGGCACGACGCCTTTCAGCTCTGCAGCAGCTTTGCCTCCAGGGTCATACGCATCCTTAG
Seq A exon
GTAACCACACCCCTGTCACCCTTTCCCTCCTGCACTGCTCTGCAAGAGATGACTCTTAACCTCTTAGCAAAATACAAACCCATGATTGAGGCAAGTCTCACTGTTGTGGGGCTACTATTTAAATCTAAGTAGCTTCGTGCACTTGCTGCTGATCAGCCAGCCACCCTTGTTGAGTGTCCCTTTCTTCGATGCATCATCCGTTTTAGTGCTGAGTAAGTACACAGTACACTCATGCTCGGAGGGTGTGTGGCACTGAGCACGTCCTTTCCTCAACTCTTCCTCTTCCTCCATGGCAAGCCCAGCCACCTCCCATATTGTCAAAGCTAAGTTTTTTCCCCCTCTGACACTGGTGGGAGCAGAGCCAGCAGGTTCAGTGAGGGATTCACCAAAGGTAGTCAGTGTCATTAGGTGTTTCTCAATTTGAGAATATAACCAGAGCTGGCAGGGATAATCGGGTTGGGTTGTGGGGAATGGCAGGAGGAATCTGAAGGAATGTGATGAGCTCATGAATCAGCATAACCATGTCTGTGCAAAAGAGTGTTGTCCTTCCATGTATCACCTTGGGAGGAGCATGCCCTTACTCTGATGATTGCCCAAAAAAGTTTTTTAAAAACTACTTCCAAAACTTTTAGCATCTGACATAGTGATAGATCGACTATTCATATTTTTCAGCAGTTGCTTAACACGTACTGTGTGTCAGGCTAATTGTTTATTTCGTTTTGTTTTTGTAAGAGCCAATTCATTCAAAGCCAAAATCTAGGGACTTAGCTGGATTGGTTCTACTTTAGATTTTAAGGAAATGAATAAAATTTAAACTTCCTGAAATATTGAGGTGGAGTTACTCATGTAACTTTCAGACAAATTCCAGAGTCAGTTCTAAAACTAATGTTCTGAAAATGTTTTGAACATTGGAAGCACAGTGAACAAATAGCACCCAGAGAAGATTTTAGGGTCTGCCATTTATTCGCTCTGTGACCTGGAGTAGGCCGTGGAATCTGTAGGTCTATTTTCCATACCTGCAAATTACTTGTAATAATAGCCACCTAACTCATATATGAGGCAAAATGAAATTATATAAAGGTTCTTTATAAACTATTGTTCTGTAAGGTGGAAGAAAGTGTGATTGTGATAGGAACATTATTAATTTGAAAGATATGTGTTCTGGAACATTTGCTCAGTCAGTCTTGTTTTTATGGAAATACCTCATACACCCATAACAATTGAGAAGAAATTCATTAAGAACTCTCTTTTTAAAATCGTTTTTAACTATTGCAGCATTATGTAGGAGTGTTGTCCATATGTAACCATTGAGCAAAGGAGAAGTAACAACTCTTCCTCCTATGCTGAATTAGTTCTGTTAATTTTAGTTTAGTTTTTCAGTACTTACCTATGCTTTAGTATATTAGATCCACCTTTAGTATTTGTAATTAGTATTTGTTTCATTGTTGGAAAAAGTGAGTAAAAATCAGCCTCAGTATTTTTGTTTTTCTGTCTGTATTATGGAGTGTTTGAATATGGCTGGTATAGACTTCCCCCAGTGCTAGTAAAAGCCCTCACGTCTTTTGGTATGATAATATGGAGCTGACCCTTCAGAAGCACTGATGATAAGTTTTCAGTCCAGTATTAACCTCTTCAAAGAACGAGACTGGAGTATTCAAATTCTCTGTTTCCTGAGAATTCTACCTCAACTTCCCTTATTTTGTCCCCAAACAAAAACACCAAAAAATTGAAATATAGCACAATCCTAGTGAGAATTTGTTACAGTTGCTACCTAGGTTGACACATGACATCTTTGCAAAAGTGTAGCATTAAAGCTGATGATCCTTTTCCAAACTTCTAGAGTCCAGACACATGAGGGAAGACATGGAGTACATAGGCCTGGACTCAGGTACCATGCTCGACAGCTTTTGCTGCTGGACGTGTAGTTGGGATAGGCATTGCTAGAGCAAGCTTCTCTGAGCTTCTTACTTGGCTCTGCCTTTTGGGTAACTCTTTAGTATTTTAGCTTCTAGTTCCTCCTCTCTGCCCTGTTCTGCTGGTACTTTCTTCCAAGAAAAAGGAACTCTTAAGAGGATGAGAGTTGGCTAAAACAAAAAATAATCTTTCTTTCAACTGTGGCACTACCCTGGGTTGCCCGTCTGTGTTTTATTTTCCAAAGGCAAAAAAACCATTATGCTATGTTAAGCTAATTTCAATACAAGGCACACTTACTTGCTTCAGACTCTGCTTTGCTGTTGAACTTGTTTCCCTTTTAATTTTGTTTTAAATTGTACTTTTGCTTTTTTAGTAGCTAATAACATTCGGCTTTTTAATTTTTTGAATGTTACTAACTGTTCCCTGTTATCCCTTCCCTTGTTTTTTAATTTGCTTAAAG
Seq C2 exon
ATGGTACTACCACTAAAGCGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-CLASP1:NM_001142273:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF123333=Ipi1_N=PD(11.0=31.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)