MmuEX0011499 @ mm9
Exon Skipping
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:120406783-120418511:+
Coord C1 exon
chr1:120406783-120406953
Coord A exon
chr1:120409282-120409305
Coord C2 exon
chr1:120418404-120418511
Length
24 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTAATTGGCTTAAAGACG
3' ss Score
1.89
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCTCTACAGTTAGTACCAAATCTGTGTCGACGACAGGATCTCTCCAGCGATCTCGAAGTGATATTGATGTGAACGCAGCAGCCAGTGCCAAATCCAAAGTCTCCTCATCCTCAGGATCCCCCGCCTTCAGCTCTGCAGCAGCACTGCCCCCAGGATCCTATGCGTCCCTAG
Seq A exon
ACGGTACTACCACTAAAGCGGAGG
Seq C2 exon
GTCGGATCCGCACGAGACGGCAGAGCTCGGGGAGCACCACCAATGTCGCCTCCACACCCTCCGACAGTCGGGGCCGCAGTCGCGCCAAAGTGGTTTCACAGTCTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-'24-21,'24-20,26-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCATCCTCAGGATCCCC
R:
GACATTGGTGGTGCTCCCC
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: