MmuEX0011652 @ mm10
Exon Skipping
Gene
ENSMUSG00000030364 | Clec2h
Description
C-type lectin domain family 2, member h [Source:MGI Symbol;Acc:MGI:2136934]
Coordinates
chr6:128673976-128674838:+
Coord C1 exon
chr6:128673976-128674160
Coord A exon
chr6:128674385-128674541
Coord C2 exon
chr6:128674732-128674838
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCACAGTAATATCTTCCAGGCC
3' ss Score
5.89
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
TGAGAAATAAAATCCCAGCCATGGAAGACCGTGAACCTTGCTACACCGCATGCCCAAGTGGCTGGATTGGATTTGGAAGTAAATGCTTTTATTTTTCTGAAGACATGGGAAACTGGACCTTCAGTCAGTCCTCCTGCGTAGCATCAAATTCCCATCTAGCACTGTTTCACAGCCTGGAGGAGCTG
Seq A exon
GCCAGGCATACAATCTCCTGAAGAGGTTTTCTGAAGAGATACCATGTGGTCATGTAAGCTTTTCTCCAAGCATTCACATGTTGCATACTGAACGAGGCATCTATTAAAAATGGCAAGGACATCATAAATCATGGACTTCCAAGCCAGAGTTGGACAG
Seq C2 exon
AATTTTCTGAAGAGATACAAGGGGACTTCTGACCACTGGATTGGCCTGCACAGAGCATCAACACAGCACCCTTGGATATGGACAGACAACACTGAATATAGCAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030364_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(28.1=43.5)
A:
NA
C2:
PF0005916=Lectin_C=FE(36.5=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGACCGTGAACCTTGC
R:
CCATATCCAAGGGTGCTGTGT
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types