MmuEX0011652 @ mm9
Exon Skipping
Gene
ENSMUSG00000030364 | Clec2h
Description
C-type lectin domain family 2, member h [Source:MGI Symbol;Acc:MGI:2136934]
Coordinates
chr6:128623994-128624856:+
Coord C1 exon
chr6:128623994-128624178
Coord A exon
chr6:128624403-128624559
Coord C2 exon
chr6:128624750-128624856
Length
157 bp
Sequences
Splice sites
3' ss Seq
CTCACAGTAATATCTTCCAGGCC
3' ss Score
5.89
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
TGAGAAATAAAATCCCAGCCATGGAAGACCGTGAACCTTGCTACACCGCATGCCCAAGTGGCTGGATTGGATTTGGAAGTAAATGCTTTTATTTTTCTGAAGACATGGGAAACTGGACCTTCAGTCAGTCCTCCTGCGTAGCATCAAATTCCCATCTAGCACTGTTTCACAGCCTGGAGGAGCTG
Seq A exon
GCCAGGCATACAATCTCCTGAAGAGGTTTTCTGAAGAGATACCATGTGGTCATGTAAGCTTTTCTCCAAGCATTCACATGTTGCATACTGAACGAGGCATCTATTAAAAATGGCAAGGACATCATAAATCATGGACTTCCAAGCCAGAGTTGGACAG
Seq C2 exon
AATTTTCTGAAGAGATACAAGGGGACTTCTGACCACTGGATTGGCCTGCACAGAGCATCAACACAGCACCCTTGGATATGGACAGACAACACTGAATATAGCAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030364_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(54.5=100)
A:
PF054737=Herpes_UL45=PD(1.8=28.6)
C2:
PF0005916=Lectin_C=FE(36.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAAGACCGTGAACCTTGC
R:
CCATATCCAAGGGTGCTGTGT
Band lengths:
246-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types