MmuEX0012124 @ mm10
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34044819-34049678:+
Coord C1 exon
chr17:34044819-34045010
Coord A exon
chr17:34045990-34046241
Coord C2 exon
chr17:34049619-34049678
Length
252 bp
Sequences
Splice sites
3' ss Seq
CCCGTATTTCTCCACTGCAGCGT
3' ss Score
9.17
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GGCGATGTTCAGGAGCTCCTCGTTGTCCCAGGCGTCCAAGCTGCCTATCAGTCTTGTGGGCAGAAGGATCTGGAATGTGAGAGAGAACAGAGGGACGGCCCTCAGACTCAGAAGCCTCACAGAGCCCAGAGATCTCCAAAGAAGGAACCAGCAAGACTTCATAAGCCACAGAGCCAGGAGCCCCAGAAGCAG
Seq A exon
CGTCCTCAGAGCTCCAACCACAGGGCTCCCCCTTCCCCTAGGGGGCGTCGGACCCCTCCCAGAAAGTCTAACCCTCCTGCCAAGAGGTCAGCAGCCAGGCAGGCGCCCCAATCACCAGCCCGGAGGCCCTCTCCAGCTGGAGGCTCTGGCAAAGCCCTCGGCCAGCCTCCCCCCTCCCGACACCCAGCTCGACGGGCAGCTTCCCCCACTGCCAGGGCTTCCCCCAGGACCAGAGGCAGCGGTTATCGGCAG
Seq C2 exon
GTTGCCCACGGACCCCGGGGGCTAAAGGGAGAGAAGGGAGAGCCTGCAGTGCTGGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330_MULTIEX1-2/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0221019=Laminin_G_2=PD(7.3=14.1)
A:
NO
C2:
PF0139113=Collagen=PU(1.7=5.0)
Main Inclusion Isoform:
ENSMUST00000087497fB1087
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGATGTTCAGGAGCTCCTC
R:
AGGCTCCAGCACTGCAGG
Band lengths:
252-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types