Special

MmuEX0012195 @ mm9

Exon Skipping

Gene
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4470596-4471284:+
Coord C1 exon
chr6:4470596-4470649
Coord A exon
chr6:4470772-4470879
Coord C2 exon
chr6:4471231-4471284
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTCTTAAAAAAAAAAACAGGGC
3' ss Score
0.38
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTGAGCCTGGTCCTGCTGGCTCCAAAGGAGAATCCGGTAACAAGGGTGAGCCT
Seq A exon
GGCTCTGTTGGAGCCCAAGGTCCTCCTGGTCCCAGCGGTGAAGAAGGAAAGAGAGGGTCTCCCGGAGAAGCTGGATCTGCTGGCCCTGCAGGGCCTCCAGGGCTTAGA
Seq C2 exon
GGCAGCCCTGGTTCTCGAGGTCTTCCTGGAGCTGATGGCAGAGCTGGTGTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'25-27,'25-26,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):

C1:
PF0139113=Collagen=FE(17.2=100),PF0139113=Collagen=PU(15.3=61.1)
A:
PF0139113=Collagen=PD(29.3=80.6),PF0139113=Collagen=FE(48.6=100),PF0139113=Collagen=PU(8.3=19.4)
C2:
PF0139113=Collagen=FE(23.6=100),PF0139113=Collagen=FE(20.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGCCTGGTCCTGCT
R:
TTACACCAGCTCTGCCATCAG
Band lengths:
106-214
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types