DreEX6074022 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41404663-41405615:+
Coord C1 exon
chr19:41404663-41404716
Coord A exon
chr19:41404820-41404927
Coord C2 exon
chr19:41405562-41405615
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTCATCTGTTTTCTGTACAGGGT
3' ss Score
9.89
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTGACCCCGGACCTGTTGGAGTGAAGGGAGATTCTGGTGTGAAGGGAGAGCCT
Seq A exon
GGTAGTGCTGGTCCTCAGGGGCCTCCTGGTCCTTCTGGTGAGGAGGGCAAGAGAGGGTCAACTGGAGAGCAGGGACCTACTGGACCTTTGGGACTGCGTGGACCTAGA
Seq C2 exon
GGAGCCGCTGGTACTCGTGGTCTGCCTGGTCTGGCTGGCAGGTCAGGCCCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007-'24-20,'24-19,25-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=PU(7.8=27.8)
A:
PF0139113=Collagen=PD(10.6=19.4),PF0139113=Collagen=FE(54.7=100)
C2:
PF0139113=Collagen=FE(26.6=100),PF0139113=Collagen=PU(13.2=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCGGACCTGTTGGAG
R:
CCTGACCTGCCAGCCAGA
Band lengths:
98-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]