MmuEX0012200 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4531238-4532797:+
Coord C1 exon
chr6:4531238-4531345
Coord A exon
chr6:4531895-4531948
Coord C2 exon
chr6:4532744-4532797
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTGCTTTCATTTAGGGT
3' ss Score
11.9
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGTGCTGCTGGCCAACCCGGTGCTAAAGGAGAGAAGGGAACCAAAGGGCCTAAGGGTGAAAATGGCATTGTTGGTCCAACCGGGTCTGTTGGAGCTGCTGGCCCATCT
Seq A exon
GGTCCTAATGGCCCACCTGGTCCTGTTGGAAGTCGTGGTGATGGAGGGCCCCCT
Seq C2 exon
GGTATGACTGGCTTCCCTGGTGCTGCTGGACGGACTGGTCCCCCCGGACCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'59-58,'59-56,60-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(23.9=58.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCGGTGCTAAAGGAGAGA
R:
CAGTCCGTCCAGCAGCAC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types