MmuEX0012279 @ mm10
Exon Skipping
Gene
ENSMUSG00000031502 | Col4a1
Description
collagen, type IV, alpha 1 [Source:MGI Symbol;Acc:MGI:88454]
Coordinates
chr8:11202894-11206403:-
Coord C1 exon
chr8:11206226-11206403
Coord A exon
chr8:11204536-11204552
Coord C2 exon
chr8:11202894-11203008
Length
17 bp
Sequences
Splice sites
3' ss Seq
TCTGTGGTTTTTCTTTTTAGCTT
3' ss Score
10.07
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTACGGCTGGCAGCTGCCTGCGTAAGTTCAGCACCATGCCCTTTCTCTTCTGCAACATCAACAACGTCTGCAACTTCGCCTCCAGGAACGACTACTCTTACTGGCTGTCCACGCCAGAGCCCATGCCCATGTCCATGGCACCCATCTCTGGGGACAACATCCGGCCCTTCATTAGCAG
Seq A exon
CTTTCCTTGGAAAACAG
Seq C2 exon
GTGTGCGGTTTGTGAAGCACCGGCCATGGTGATGGCGGTACACAGTCAGACCATTCAGATTCCGCAGTGCCCTAACGGTTGGTCCTCACTGTGGATCGGCTATTCCTTCGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031502_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141314=C4=FE(53.6=100)
A:
PF0141314=C4=PD(1.0=14.3)
C2:
PF0141314=C4=PD(6.4=17.9),PF0141314=C4=PU(26.3=76.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTCCATGGCACCCATCTC
R:
GTCTGACTGTGTACCGCCATC
Band lengths:
102-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types