RnoEX0023239 @ rn6
Exon Skipping
Gene
ENSRNOG00000016281 | Col4a1
Description
collagen type IV alpha 1 chain [Source:RGD Symbol;Acc:1307148]
Coordinates
chr16:83624118-83627919:+
Coord C1 exon
chr16:83624118-83624295
Coord A exon
chr16:83626499-83626515
Coord C2 exon
chr16:83627805-83627919
Length
17 bp
Sequences
Splice sites
3' ss Seq
TTCATGGTTTTTCTTTTTAGCTT
3' ss Score
9.14
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTACGGCTGGCAGCTGTCTGCGCAAGTTCAGCACCATGCCCTTCCTCTTCTGCAACATCAACAACGTCTGCAACTTCGCCTCCAGGAACGACTACTCCTACTGGCTGTCCACTCCGGAGCCCATGCCCATGTCCATGGCACCTATCTCTGGGGACAACATCCGGCCCTTCATTAGCAG
Seq A exon
CTTTCCTTGGAAAACAG
Seq C2 exon
GTGTGCAGTTTGCGAAGCGCCCGCCATGGTGATGGCGGTGCACAGTCAGACCATCCAGATCCCGCAGTGCCCCAACGGTTGGTCCTCACTGTGGATTGGCTATTCCTTTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016281-'61-64,'61-63,62-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0141314=C4=FE(53.6=100)
A:
PF0141314=C4=PD(1.0=14.3)
C2:
PF0141314=C4=PD(6.4=17.9),PF0141314=C4=PU(26.3=76.9)
Main Inclusion Isoform:
ENSRNOT00000057386fB3397
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCACCTATCTCTGGGGA
R:
CGGGATCTGGATGGTCTGACT
Band lengths:
109-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]