MmuEX0012305 @ mm10
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:141168594-141169750:-
Coord C1 exon
chrX:141169559-141169750
Coord A exon
chrX:141169393-141169490
Coord C2 exon
chrX:141168594-141168880
Length
98 bp
Sequences
Splice sites
3' ss Seq
GACCACTTTTCTTCTCACAGCCC
3' ss Score
8.69
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GAGCTCCGGGAAATCAGGGCCCCATTGGGCAGCCTGGGATGCCTGGGCACGGTGTGAGAGTGGGCTACACACTAGTAAAACACAGTCAGTCAGAACAGGTGCCACTATGCCCCACTGGGATGAGCCGGCTCTGGGTGGGTTACAGCTTGCTCTTCGTGGAGGGGCAGGAGAAAGCCCATAACCAGGATCTGG
Seq A exon
CCCTTTCGACTCATGGTTATGAAATAGGCCACAGCTCTGGGGTCAAAAGGATTTTGATTCAAATGCTGGTCCTACTGCTTCAAAGCCACAGGCCCTGG
Seq C2 exon
GATTTGCTGGCTCCTGCCTGCCCCGATTCAGCACCATGCCCTTCATATACTGCAACATCAATGAAGTGTGCCACTATGCCAGACGCAATGATAAATCTTACTGGCTCTCCACTACTGCCCCCATTCCCATGATGCCTGTGGGCCAGACCCAGATTCCCCAGTATATCAGCCGCTGCTCTGTATGTGAGGCACCCTCACAAGCCATTGCTGTACACAGTCAGGACATCATTGTCCCACAGTGCCCTCTGGGCTGGCACAGCCTCTGGATCGGATACTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'53-58,'53-57,54-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.328 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(37.3=33.8),PF0141314=C4=PU(39.8=66.2)
A:
PF0141314=C4=PD(12.0=18.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(25.9=31.2)
Main Inclusion Isoform:
ENSMUST00000101205fB1099
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAGAAAGCCCATAACC
R:
CACAGGCATCATGGGAATGGG
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types