MmuEX0012644 @ mm10
Exon Skipping
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:195169300-195171170:-
Coord C1 exon
chr1:195170991-195171170
Coord A exon
chr1:195169702-195169801
Coord C2 exon
chr1:195169300-195169400
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCGTTTCCCTTGTAGGTA
3' ss Score
12.21
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTCAGTGTAAGTTGCTGCCAAAGTATTCTTTTGCTAAACCTTCTATTGTGAGTGATAAATCTGAGTTTGCCATTGGAACAACTTGGGAATACAAATGTCGCCCTGGGTATTTTAGGAAGTCATTTATTATCACCTGCTTAGAAACCTCCAAGTGGTCAGATGCTCAGCAGTTCTGTAAAC
Seq A exon
GTAAACCATGTATGAATCCTCAAGAACCCCTCCATGGTTCTGTGCATATAAACACGGGTATCGAGTTTGGGTCAACAATTACGTATTCTTGTAATCAAGG
Seq C2 exon
GTTTTTCTAAAGTGTAAGTGTAACTGGGATATGATGAGTCACCTCTTTGCTTCTAGATATCGACTCATTGGTGACTCGTCTGCTACATGTATTGTATCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-'2-5,'2-4,4-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=95.0)
A:
PF0008415=Sushi=PU(51.7=88.2)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAAAGTATTCTTTTGCT
R:
GCAGACGAGTCACCAATGAGT
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types