GgaEX6026782 @ galGal4
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2629485-2631014:+
Coord C1 exon
chr26:2629485-2629676
Coord A exon
chr26:2630227-2630323
Coord C2 exon
chr26:2630929-2631014
Length
97 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTTCCCTTTCCCAGCAA
3' ss Score
9.17
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GCTCCTGCACGCTTCCAGACAAGGTCCAGAATGCAGAGCTCACGGAGGATGCCAGCACAATGAGCAGCTTTCCTGTTGGAACCACTGTGAGCTACACCTGTCGCCCTGGCTATATGAGGATCCCTGGGATGCCTGTTAGTCGAACGTGTGGCGAAAACTTAATGTGGTCGCAAATAGAGACGTTCTGTACAG
Seq A exon
CAAGAAGCTGTACTCATCCGGGAGAACTACAAAATGGCGTTGTTCATGTGACAGATCTTACATTTGGTTCGGCAGTTACTTTTTCTTGTGAAAAAGG
Seq C2 exon
GTACAGGTTACATGGAAATCGTCAGATTTCCTGTGTAATTCAAGGTAAAGTTGTTGACTGGAATGGACCTCTTCCTTTATGTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'9-9,'9-7,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=93.8)
A:
PF0008415=Sushi=PU(50.9=87.9)
C2:
PF0008415=Sushi=PD(47.4=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCCCTGGCTATATGAGGA
R:
GGAAGAGGTCCATTCCAGTCA
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]