MmuEX0012649 @ mm9
Exon Skipping
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:196989392-197002909:-
Coord C1 exon
chr1:197002747-197002909
Coord A exon
chr1:196991233-196991318
Coord C2 exon
chr1:196989392-196989781
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCCTTATTGTTTAAGGTT
3' ss Score
7.69
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AGCCGCAGGCAGCCAGCCCCGCAGGCAGCCAGCCCCGTCCTCTTCCTCTCCTTGCTACAGGCTCACAACTCACAGAGCGCAACCTGCCATTGGACTGCTGCACACATGGGATCCTTGGGTTCGCTCTGGGTTTTCTTCACTCTCATCACTCCAGGAGTTCTTG
Seq A exon
GTTCCAGTTAAAAGGCAAACCTTCTAGTCAGTGTATCCCAGAAGGAGAGACAGTAATCTGGAATAATAAGTTTCCTGTCTGTGAAC
Seq C2 exon
AGATTTCTTGTGACCCTCCTCCTGAAGTCAAAAATGCTCGGAAACCCTATTATTCTCTTCCCATAGTTCCTGGAACTGTTCTGAGGTACACTTGTTCACCTAGCTACCGCCTCATTGGAGAAAAGGCTATCTTTTGTATAAGTGAAAATCAAGTGCATGCCACCTGGGATAAAGCTCCTCCTATATGTGAATCTGTGAATAAAACCATTTCTTGCTCAGATCCCATAGTACCAGGGGGATTCATGAATAAAGGATCTAAGGCACCATTCAGACATGGTGATTCTGTGACATTTACCTGTAAAGCCAACTTCACCATGAAAGGAAGCAAAACTGTCTGGTGCCAGGCAAATGAAATGTGGGGACCAACAGCTCTGCCAGTCTGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616_MULTIEX1-7/7=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PD(45.8=90.0)
C2:
PF0008415=Sushi=WD(100=45.8),PF0008415=Sushi=WD(100=43.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTTCGCTCTGGGTTTTC
R:
AGCCTTTTCTCCAATGAGGCG
Band lengths:
177-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: