BtaEX0010034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5253453-5275094:+
Coord C1 exon
chr16:5253453-5253601
Coord A exon
chr16:5273806-5273891
Coord C2 exon
chr16:5274985-5275094
Length
86 bp
Sequences
Splice sites
3' ss Seq
GCTGCCCCTTATTGTTTAAGGTA
3' ss Score
7.82
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AGCTGCCAGCTTCTCTAGCCCTGTCTTCTCGGAGCTGCTGGAGGCTCGCGGGTCTCAGAACGCATCCCGCCGCTGGGGCTGCAGCCGTGGCATGGGCGCCGCGGGCCCGATCTGGGTTTTCCTGACTCTTCTCGCGCCGGGGGTCCTCG
Seq A exon
GTACCGGTTAAATGGCCAGTCTTCTAGTCAGTGTGTCTCAGAAGGAATGAGAGTTTTCTGGAGTAATAAATTTCCTGTCTGTGAAC
Seq C2 exon
GGATTTTTTGTGACCCCCCTCCTTCTATCAAAAATGGACGCAGTAGTTATTATTCTGGTCCTGTAGCTCATAATGCTGTGGTGACCTATACATGTCAGAGTGCCTTCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496_MULTIEX1-7/7=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PD(45.8=90.0)
C2:
PF0008415=Sushi=PU(56.9=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAACGCATCCCGCC
R:
GGTCACCACAGCATTATGAGCT
Band lengths:
182-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development