BtaEX0010031 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5253453-5275094:+
Coord C1 exon
chr16:5253453-5253601
Coord A exon
chr16:5270818-5271216
Coord C2 exon
chr16:5274985-5275094
Length
399 bp
Sequences
Splice sites
3' ss Seq
TATCTACCACACTGCCAAAGCTA
3' ss Score
0.62
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
AGCTGCCAGCTTCTCTAGCCCTGTCTTCTCGGAGCTGCTGGAGGCTCGCGGGTCTCAGAACGCATCCCGCCGCTGGGGCTGCAGCCGTGGCATGGGCGCCGCGGGCCCGATCTGGGTTTTCCTGACTCTTCTCGCGCCGGGGGTCCTCG
Seq A exon
CTATTCCTTGTGAGCCACCCCCAGCCATCTCTAATGGAGACTTTCAGAGCAGCAATAGAGACTACTTTTACTATGGAACAGTGGTTACTTATCAGTGCCATGTTGGACAGAATGGGAAAAAGCTGTTTGACCTCTTGGGTGAGAAGTCAATATATTGCACCAGCAAAGACAATCAAGTTGGCATCTGGAACAGCCCTCCCCCTCAGTGTATTCCGGTAGTCAAATGCCCAATTCCAGAAGTTGAAAATGGAGCTATGGAATCTGGATTTAGGCGTTCATTTTCTTTAAATGACTCTGTGATGTTTAAGTGTAAGCCTGGCTTTACCATGAAAGGCAGCAACACAGTATGGTGCCAACCAAACAGCAAATGGAATCCTCCACTGCCAAAGTGCTTCAAGG
Seq C2 exon
GGATTTTTTGTGACCCCCCTCCTTCTATCAAAAATGGACGCAGTAGTTATTATTCTGGTCCTGTAGCTCATAATGCTGTGGTGACCTATACATGTCAGAGTGCCTTCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496_MULTIEX1-4/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=50.0),PF0008415=Sushi=WD(100=41.8)
C2:
PF0008415=Sushi=PU(56.9=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGCCCTGTCTTCTCGGA
R:
CGGAAGGCACTCTGACATGTA
Band lengths:
246-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development