RnoEX0024366 @ rn6
Exon Skipping
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113917918-113921008:-
Coord C1 exon
chr13:113920923-113921008
Coord A exon
chr13:113920002-113920400
Coord C2 exon
chr13:113917918-113918094
Length
399 bp
Sequences
Splice sites
3' ss Seq
TAACTATTTCTCTCCAAAAGTGA
3' ss Score
4.14
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATATCGACTCATTGGTGACTCATCTGCTACTTGTATTATATCAGACAATACTGTCATGTGGGATAACAGTGTGCCTATTTGTGAAT
Seq A exon
TGATTCCTTGTGAGTCACCTCCAGCCATCTCCAATGGATACTTCCAAAGCAGCAGTAGAGACAGCTTTTTCTATGGGATGGTAGCAACTTATTATTGCCATGTTGGAAAGAATAGGGAAAAACTGTTTGATCTGGTGGGTGAGAAGTCAATATATTGTACCAGCAAAGACAATCAAGTTGGCATCTGGAACAGTCCACCTCCCCAGTGTATTGCTAGAGTCAAGTGCCCAATGCCAGAAATTGAAAATGGAGATGTGGAGTCTGGATTTAAACCCTCCTTCTTCTTAAACGATACAGTAATGTTTAAGTGCAAGTCTGGCTTTATCATGAAAGGCAGCAGTATAGTGTGGTGCCAGCCAGACAGCAAATGGAGCCCTCCACTGCCAACATGCTTCAGGG
Seq C2 exon
GATGTCTACCACCTCAAAATATCCTCCATGGTGATTATAATGAAAAGGATAAGGAATTCTTTTCTGTTGGCCAAAAAGTGTCCTATAGCTGTGAACCTGGATATACTCTCATTGGAACTAACCTTGTGGAGTGTACACCCTTGGGAGCCTGGAGCCCTTCAGTCCCAACATGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164-'6-7,'6-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.6=90.0)
A:
PF0008415=Sushi=WD(100=50.0),PF0008415=Sushi=WD(100=41.8)
C2:
PF0008415=Sushi=WD(100=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGACTCATTGGTGACTCATCTG
R:
TTCACATGTTGGGACTGAAGGG
Band lengths:
262-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]