RnoEX0024369 @ rn6
Exon Skipping
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113915179-113927745:-
Coord C1 exon
chr13:113927688-113927745
Coord A exon
chr13:113917918-113918094
Coord C2 exon
chr13:113915179-113915568
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGGTCCTGTTTTTTCCTCAGGAT
3' ss Score
10.49
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
ATGGGAGCCTTGGGTTCGCTCTGGGTTTTCTTCGCTCTCATCGCTCCGGGAGTTCTTG
Seq A exon
GATGTCTACCACCTCAAAATATCCTCCATGGTGATTATAATGAAAAGGATAAGGAATTCTTTTCTGTTGGCCAAAAAGTGTCCTATAGCTGTGAACCTGGATATACTCTCATTGGAACTAACCTTGTGGAGTGTACACCCTTGGGAGCCTGGAGCCCTTCAGTCCCAACATGTGAAG
Seq C2 exon
AGCTTTCTTGTGACCCTCCTCCTGAAGTAAACAATACTCGGAGACTCTATTACTCTCTTCCCGTACTTCCTGGGACGGTCGTGAGGTACACTTGTTTACCTGGGTATCGCCTCATTGGAGAAAAGGCTATCTTTTGTATAAGTAAAGATCAAGTGACTGCCACCTGGGATAAAGCTACACCTATATGTGAACCTTGGAATAAAATGTCTGCTTGCTCAAAGCCCATAGTACCAGGGGGAATCATAAATCCAGGATCTAGACCACCATTCAAACATGGTGATTCTGTGACAGTTACCTGTAAAGCCAACTTCACCATGAAAGGGAGCAAAACTGTCTGGTGCCGGGCAAATAAAATGTGGGGACCAACACCCCTGCCAGTCTGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164_MULTIEX1-5/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=95.0)
C2:
PF0008415=Sushi=WD(100=45.8),PF0008415=Sushi=WD(100=43.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCTCCGGGAGTTCTTG
R:
CCCCCTGGTACTATGGGCTTT
Band lengths:
258-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]