RnoEX0024365 @ rn6
Exon Skipping
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113920002-113921452:-
Coord C1 exon
chr13:113921353-113921452
Coord A exon
chr13:113920923-113921008
Coord C2 exon
chr13:113920002-113920400
Length
86 bp
Sequences
Splice sites
3' ss Seq
AGTCACCTCTTTGCTTCTAGATA
3' ss Score
7.23
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTAAACCATGTATGAATCCTCAAGAACCCCTCCATGGTTCTGTGCATATAAACACTGGTATCACGTTTGGGTCAACAATTACATATTCTTGTAATAAAGG
Seq A exon
ATATCGACTCATTGGTGACTCATCTGCTACTTGTATTATATCAGACAATACTGTCATGTGGGATAACAGTGTGCCTATTTGTGAAT
Seq C2 exon
TGATTCCTTGTGAGTCACCTCCAGCCATCTCCAATGGATACTTCCAAAGCAGCAGTAGAGACAGCTTTTTCTATGGGATGGTAGCAACTTATTATTGCCATGTTGGAAAGAATAGGGAAAAACTGTTTGATCTGGTGGGTGAGAAGTCAATATATTGTACCAGCAAAGACAATCAAGTTGGCATCTGGAACAGTCCACCTCCCCAGTGTATTGCTAGAGTCAAGTGCCCAATGCCAGAAATTGAAAATGGAGATGTGGAGTCTGGATTTAAACCCTCCTTCTTCTTAAACGATACAGTAATGTTTAAGTGCAAGTCTGGCTTTATCATGAAAGGCAGCAGTATAGTGTGGTGCCAGCCAGACAGCAAATGGAGCCCTCCACTGCCAACATGCTTCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.2)
A:
PF0008415=Sushi=PD(46.6=90.0)
C2:
PF0008415=Sushi=WD(100=50.0),PF0008415=Sushi=WD(100=41.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCAAGAACCCCTCCATGG
R:
TGCTACCATCCCATAGAAAAAGCT
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]