MmuEX0012645 @ mm10
Exon Skipping
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:195168334-195169801:-
Coord C1 exon
chr1:195169702-195169801
Coord A exon
chr1:195169259-195169344
Coord C2 exon
chr1:195168334-195168732
Length
86 bp
Sequences
Splice sites
3' ss Seq
AGTCACCTCTTTGCTTCTAGATA
3' ss Score
7.23
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTAAACCATGTATGAATCCTCAAGAACCCCTCCATGGTTCTGTGCATATAAACACGGGTATCGAGTTTGGGTCAACAATTACGTATTCTTGTAATCAAGG
Seq A exon
ATATCGACTCATTGGTGACTCGTCTGCTACATGTATTGTATCAGACAATACTGTAATGTGGGATAATGATATGCCTCTTTGTGAAT
Seq C2 exon
CTATTCCTTGTGAGTCACCTCCAGCCATCTCCAATGGAGACTTCTACAGCAGCAGCAGAGACAGCTTTTTCTATGGGATGGTAGTAACTTATTATTGCCATACCGGAAAGAATAGGGAAAAACTGTTTGATCTGGTGGGTGAGAAGTCAATATATTGTACCAGCAAAGACAATCAAGTTGGCATCTGGAATAGTCCACCTCCTCAGTGTATTCCTAGAGTCAAGTGCCCAATGCCAGAAATTGAAAATGGACTAGTGGAGTCTGGATTTAAACACTCCTTCTTCTTAAATGATACAGTAATATTTAAGTGCAAATCTGGCTTTACCATGAAAGGCAGCAGAATAGCATGGTGCCAGCCAAACAGCAAATGGAGCCCTCCATTGCCAACATGCTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.2)
A:
PF0008415=Sushi=PD(46.6=90.0)
C2:
PF0008415=Sushi=WD(100=50.0),PF0008415=Sushi=WD(100=41.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGGTATCGAGTTTGGGT
R:
TCCCTATTCTTTCCGGTATGGCA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types