MmuEX0012643 @ mm10
Exon Skipping
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:195163198-195176716:-
Coord C1 exon
chr1:195176553-195176716
Coord A exon
chr1:195170991-195171170
Coord C2 exon
chr1:195163198-195163587
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTGTGGTCCTTATTTCTAGGTC
3' ss Score
10.62
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CAGCCGCAGGCAGCCAGCCCCGCAGGCAGCCAGCCCCGTCCTCTTCCTCTCCTTGCTACAGGCTCACAACTCACAGAGCGCAACCTGCCATTGGACTGCTGCACACATGGGATCCTTGGGTTCGCTCTGGGTTTTCTTCACTCTCATCACTCCAGGAGTTCTTG
Seq A exon
GTCAGTGTAAGTTGCTGCCAAAGTATTCTTTTGCTAAACCTTCTATTGTGAGTGATAAATCTGAGTTTGCCATTGGAACAACTTGGGAATACAAATGTCGCCCTGGGTATTTTAGGAAGTCATTTATTATCACCTGCTTAGAAACCTCCAAGTGGTCAGATGCTCAGCAGTTCTGTAAAC
Seq C2 exon
AGATTTCTTGTGACCCTCCTCCTGAAGTCAAAAATGCTCGGAAACCCTATTATTCTCTTCCCATAGTTCCTGGAACTGTTCTGAGGTACACTTGTTCACCTAGCTACCGCCTCATTGGAGAAAAGGCTATCTTTTGTATAAGTGAAAATCAAGTGCATGCCACCTGGGATAAAGCTCCTCCTATATGTGAATCTGTGAATAAAACCATTTCTTGCTCAGATCCCATAGTACCAGGGGGATTCATGAATAAAGGATCTAAGGCACCATTCAGACATGGTGATTCTGTGACATTTACCTGTAAAGCCAACTTCACCATGAAAGGAAGCAAAACTGTCTGGTGCCAGGCAAATGAAATGTGGGGACCAACAGCTCTGCCAGTCTGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616_MULTIEX1-2/8=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.4)
C2:
PF0008415=Sushi=WD(100=45.8),PF0008415=Sushi=WD(100=43.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCCTTGCTACAGGCTC
R:
AGCCTTTTCTCCAATGAGGCG
Band lengths:
248-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types