GgaEX6026783 @ galGal3
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
NA
Coordinates
chr26:2498376-2500074:+
Coord C1 exon
chr26:2498376-2498469
Coord A exon
chr26:2499237-2499428
Coord C2 exon
chr26:2499978-2500074
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTTGCACTCCTGCAGGCT
3' ss Score
9.23
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGAGAGAGGCCTCGACGCGGAGCCGCGGGCATGGCGGTGGGGGTGTTTGCGTTGGCGGTGCTGCTGGCGGGGCTCGGCGCGGCACGGGCGCAGG
Seq A exon
GCTCCTGCACGCTTCCAGACAAGGTCCAGAATGCAGAGCTCACGGAGGATGCCAGCACAATGAGCAGCTTTCCTGTTGGAACCACTGTGAGCTACACCTGTCGCCCTGGCTATATGAGGATCCCTGGGATGCCTGTTAGTCGAACGTGTGGCGAAAACTTAATGTGGTCGCAAATAGAGACGTTCTGTACAG
Seq C2 exon
CAAGAAGCTGTACTCATCCGGGAGAACTACAAAATGGCGTTGTTCATGTGACAGATCTTACATTTGGTTCGGCAGTTACTTTTTCTTGTGAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'1-1,'1-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.8)
C2:
PF0008415=Sushi=PU(50.9=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAGGCCTCGACGC
R:
TTCACAAGAAAAAGTAACTGCCGA
Band lengths:
186-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]