RnoEX0018685 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113813217-113817995:-
Coord C1 exon
chr13:113817864-113817995
Coord A exon
chr13:113813972-113814160
Coord C2 exon
chr13:113813217-113813319
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTGTATTGTCCCTAGATG
3' ss Score
10.47
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
AGTCTGGTAACATGACGGCGGCGCCTCTCACGCCAGACCCAACGCATCCCCGTCGCAGAAGGAAGAGCTACACTTTCTTCTCCCTGGGCATTTACGCTGAGGCCCTTCTGTTTCTGCTGTCTAGTTTATCTG
Seq A exon
ATGCCTGTGAACCACCACCACCATTTGAAGCTATGGAACTCAAGGATAAGCCTAAACCCCATTATGCGATTGGAGAGATAATAGAATATACGTGTAAAAAAGGATACCTATATCTGTCTCCATACCCAATGACTGCTATCTGTCAGCCAAATCACACATGGGTCCCTATTTCAGATCATGGTTGTATTA
Seq C2 exon
AAGTTCAATGTACTATGTTACAGGACCCTTCGTTTGGCAAAGTACACTACATAGATGGTAGATTTTCATGGGGTGCTCGAGTTAAATATACTTGTATGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917-'2-3,'2-0,6-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.8)
C2:
PF0008415=Sushi=PU(51.7=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACATGACGGCGGCG
R:
AGTATATTTAACTCGAGCACCCCA
Band lengths:
219-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]