MmuEX6030226 @ mm10
Exon Skipping
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:195085333-195092249:-
Coord C1 exon
chr1:195092099-195092249
Coord A exon
chr1:195086092-195086280
Coord C2 exon
chr1:195085333-195085435
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTGAATTGTCTCTAGATG
3' ss Score
7.87
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
CAGTTTCCCTTTCAGTCTGGTAACATGACGGCGGCGCCTCTTATGCCAGACTCAACGCACCCCTGTCGCAGAAGGAAGAGCTACACTTTCTTCTGGTGCTCCTTGGGCGTCTATGCTGAGGCCCTTCTGTTTCTGCTGTCTCATTTATCTG
Seq A exon
ATGCCTGTGAACTACCACGGCCATTTGAAGCTATGGAACTCAAGGGTACACCTAAACTCTTTTATGCCGTTGGAGAGAAAATAGAATATAAGTGTAAAAAAGGATACCTGTATCTGTCTCCATACCTGATGATTGCTACCTGTGAGCCAAATCATACATGGGTCCCTATTTCAGATGCTGGTTGTATTA
Seq C2 exon
AAGTTCAATGTACTATGTTACAAGACCCTTCATTTGGCAAAGTATACTACATAGATGGCAGCTTTTCATGGGGTGCTCGAGCTAAATTTACTTGTATGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493-'1-2,'1-1,4-2=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.8)
C2:
PF0008415=Sushi=PU(51.7=88.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTCCCTTTCAGTCTGGT
R:
GTAAATTTAGCTCGAGCACCCCA
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types