MmuEX6030226 @ mm9
Exon Skipping
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:196911527-196918442:-
Coord C1 exon
chr1:196918293-196918442
Coord A exon
chr1:196912286-196912474
Coord C2 exon
chr1:196911527-196911629
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTGAATTGTCTCTAGATG
3' ss Score
7.87
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
AGTTTCCCTTTCAGTCTGGTAACATGACGGCGGCGCCTCTTATGCCAGACTCAACGCACCCCTGTCGCAGAAGGAAGAGCTACACTTTCTTCTGGTGCTCCTTGGGCGTCTATGCTGAGGCCCTTCTGTTTCTGCTGTCTCATTTATCTG
Seq A exon
ATGCCTGTGAACTACCACGGCCATTTGAAGCTATGGAACTCAAGGGTACACCTAAACTCTTTTATGCCGTTGGAGAGAAAATAGAATATAAGTGTAAAAAAGGATACCTGTATCTGTCTCCATACCTGATGATTGCTACCTGTGAGCCAAATCATACATGGGTCCCTATTTCAGATGCTGGTTGTATTA
Seq C2 exon
AAGTTCAATGTACTATGTTACAAGACCCTTCATTTGGCAAAGTATACTACATAGATGGCAGCTTTTCATGGGGTGCTCGAGCTAAATTTACTTGTATGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.8)
C2:
PF0008415=Sushi=PU(51.7=88.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCCCTTTCAGTCTGGTAAC
R:
AGTAAATTTAGCTCGAGCACCCC
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: