RnoEX0024367 @ rn6
Exon Skipping
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113915179-113927745:-
Coord C1 exon
chr13:113927688-113927745
Coord A exon
chr13:113922643-113922822
Coord C2 exon
chr13:113915179-113915568
Length
180 bp
Sequences
Splice sites
3' ss Seq
TCTGTGGTCCTTATTTCTAGGTC
3' ss Score
10.62
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
ATGGGAGCCTTGGGTTCGCTCTGGGTTTTCTTCGCTCTCATCGCTCCGGGAGTTCTTG
Seq A exon
GTCAGTGTAAGTTGCTGCCAAAGTATTCTTTTGCTAAGCCTACTGTTGTGAGTGATAAGTCTGAGTTTGCCGTTGGAACAACTTGGAAATACAAATGCCTCCCTGGGTACTTTAGAAAGTCATTTACTATCACCTGCTTAGAATCCTCCAAGTGGTCAGACGCTCAGCAGTTCTGTAAAC
Seq C2 exon
AGCTTTCTTGTGACCCTCCTCCTGAAGTAAACAATACTCGGAGACTCTATTACTCTCTTCCCGTACTTCCTGGGACGGTCGTGAGGTACACTTGTTTACCTGGGTATCGCCTCATTGGAGAAAAGGCTATCTTTTGTATAAGTAAAGATCAAGTGACTGCCACCTGGGATAAAGCTACACCTATATGTGAACCTTGGAATAAAATGTCTGCTTGCTCAAAGCCCATAGTACCAGGGGGAATCATAAATCCAGGATCTAGACCACCATTCAAACATGGTGATTCTGTGACAGTTACCTGTAAAGCCAACTTCACCATGAAAGGGAGCAAAACTGTCTGGTGCCGGGCAAATAAAATGTGGGGACCAACACCCCTGCCAGTCTGTGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164_MULTIEX1-1/7=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.4)
C2:
PF0008415=Sushi=WD(100=45.8),PF0008415=Sushi=WD(100=43.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGCTCCGGGAGTTCTTG
R:
CCCCCTGGTACTATGGGCTTT
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]