BtaEX0010028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5253453-5275094:+
Coord C1 exon
chr16:5253453-5253601
Coord A exon
chr16:5266524-5266703
Coord C2 exon
chr16:5274985-5275094
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCTGTGATCTTTGTCTCTAGGTC
3' ss Score
12.49
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AGCTGCCAGCTTCTCTAGCCCTGTCTTCTCGGAGCTGCTGGAGGCTCGCGGGTCTCAGAACGCATCCCGCCGCTGGGGCTGCAGCCGTGGCATGGGCGCCGCGGGCCCGATCTGGGTTTTCCTGACTCTTCTCGCGCCGGGGGTCCTCG
Seq A exon
GTCAGTGTAAATTCCTGCCAAGATATCCTTTTGCTAAGCCTAAAATTCAGAGTGATCAGTCTGAGTTTGCTGTTGGCAAAACTTGGGAATATGAGTGCCTTCCTGGGTATTTCAAGAAGTCATTCTTTGTCACCTGCCTAAAGACCTCCAACTGGTCAAATGCTCAGCAATTCTGTAAAC
Seq C2 exon
GGATTTTTTGTGACCCCCCTCCTTCTATCAAAAATGGACGCAGTAGTTATTATTCTGGTCCTGTAGCTCATAATGCTGTGGTGACCTATACATGTCAGAGTGCCTTCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496_MULTIEX1-1/7=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=93.4)
C2:
PF0008415=Sushi=PU(56.9=89.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGCCCTGTCTTCTCGGAG
R:
CGGAAGGCACTCTGACATGTA
Band lengths:
245-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development