MmuEX0013331 @ mm10
Exon Skipping
Gene
ENSMUSG00000032808 | Cyp2c38
Description
cytochrome P450, family 2, subfamily c, polypeptide 38 [Source:MGI Symbol;Acc:MGI:1306819]
Coordinates
chr19:39438214-39463075:-
Coord C1 exon
chr19:39462887-39463075
Coord A exon
chr19:39460263-39460412
Coord C2 exon
chr19:39438214-39438374
Length
150 bp
Sequences
Splice sites
3' ss Seq
GTACGTTCTCATTTCTTTAGGCA
3' ss Score
8.61
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GTATGAATAAGGAGGGTTTCTATGGATCTTGTCACATTCCTGGTGCTCACTCTCTCCTCTCTCATTCTCCTCTCACTATGGAGACAGAGGTCTAGAAGAGGGAGGCTCCCTCCTGGCCCCACTCCTTTCCCGATTATTGGTAATTTCCTTCAGATTGATGTGAAGAACTTCAACCAATCCTTAACCAAT
Seq A exon
GCATTACTTTTAGCAATGGAAACAGTTGGAAAGAGACAAGACGTTTCACACTCATGACCCTAAGGAATTTGGGCATGGGGAAAAGGAACATTGAGGATCGTGTTCGAGAAGAAGCACAGTGTCTTGTGGAAGAACTAAGGAAAACCAAGG
Seq C2 exon
GCTCACCTTGTGACCCCACATTCATTCTGAGCTGTGCTCCATGCAATGTCATCTGCTCAATTATTTTTCAAGATCGTTTTGATTACAAGGATAAAGATTTTCTTATGCTCATGAAAAAACTAAATGAGAATGTCAAGATTCTGAGCTCCCCATGGTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032808_MULTIEX1-2/5=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
PF0006717=p450=FE(10.9=100)
C2:
PF0006717=p450=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTAGAAGAGGGAGGCTCC
R:
ACCATGGGGAGCTCAGAATCT
Band lengths:
257-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types