Special

MmuEX0013335 @ mm9

Exon Skipping

Gene
ENSMUSG00000025002 | Cyp2c55
Description
cytochrome P450, family 2, subfamily c, polypeptide 55 [Source:MGI Symbol;Acc:MGI:1919332]
Coordinates
chr19:39105752-39110122:+
Coord C1 exon
chr19:39105752-39105928
Coord A exon
chr19:39108729-39108870
Coord C2 exon
chr19:39109935-39110122
Length
142 bp
Sequences
Splice sites
3' ss Seq
AACGAAATAAAAATTCTCAGGAA
3' ss Score
1.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTCTACAATGCTCTGCCTACCCTCATCAATTATCTCCCAGGGAGTCATAACAAAGTAATTAAAAATTTTACTGAAATAAAAAGTTACATTTTGGGGCGAGTGAAAGAACACCAGGAAACACTGGACATGGACAATCCTCGGGACTTCATTGACTGCTTCCTGATCAAAATGGAACAG
Seq A exon
GAAAAACACAATCCCCATTCGGAGTTTACTATTGAAAGCTTGATGGCCACTGTAACCGACATATTTGTAGCTGGAACAGAAACCACAAACATTACTCTAAGATATGGACTCTTGCTCCTACTGAAACACACAGAGGTCACAG
Seq C2 exon
CTAAAGTCCAGGCAGAGATCGATCACGTGATTGGCAGACACAGGAGCCCCTGCATGCAGGACAGAACCCGCATGCCCTACACAGATGCCATGGTACATGAGATTCAGAGATACATTGACCTCATCCCCAACAATGTGCCCCATGCAGCTACCTGTAATGTTAGATTCAGAAGTTACTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025002-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006717=p450=FE(12.7=100)

							
A:
PF0006717=p450=FE(10.3=100)

							
C2:
PF0006717=p450=FE(13.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000025966





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr10:96580253-96580394 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr26:16000753-16000894 
Chicken
(galGal4)
chr1:49270458-49270599 
HIGH PSI
GgaEX0017896
(CYP2D6)
Chicken
(galGal3)
chr1:51297474-51297615 
HIGH PSI
GgaEX0017896
(F1NJG4_CHICK)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TTGGGGCGAGTGAAAGAACAC

				
R: 
CATTACAGGTAGCTGCATGGGG

				
Band lengths: 
246-388

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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