GgaEX0017896 @ galGal3
Exon Skipping
Gene
ENSGALG00000011894 | F1NJG4_CHICK
Description
NA
Coordinates
chr1:51296106-51298409:+
Coord C1 exon
chr1:51296106-51296279
Coord A exon
chr1:51297474-51297615
Coord C2 exon
chr1:51298222-51298409
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACTTGTTTGCTCTCCGCAGGGT
3' ss Score
10.17
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CTTCTTAATGTGGCACCTGTTTTGTTGCGCATCCCTGGACTGCCACAGAAGATCTTTCCGTGCCAAAAGGCATACGTAGACTTCACACAAATGCTCATAGATAAGCACAAGGAGACCTGGAACCCTGCTTACATCCGAGACTTCACTGATGCATTTTTAAAGGAAATGGCAAAG
Seq A exon
GGTAAGGAGGCTGAAGAGAATGGTTTCAATAAAAGCAACCTTACTCTGGTGACCGCAGACTTACTTGTAGCTGGTTCTGAGACCACCGCCACCACCCTCCGATGGGCGTTCCTGTTCATGCTTTTGTACCCAGAAATACAAA
Seq C2 exon
GTAAAGTCCACAAAGAGATTGATAAGGTGATTGGAAGAAACCGACCGCCCACCATGGCAGACCAAGTGAACATGCCCTACACCAATGCCGTCATCCATGAAGTACAACGCTTTGGGGACGTTGTTCCTATGGGACTACCTCACATGACATACCGGGACACTGAGCTTCAAGGTTTCTTCATTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011894-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTTGTTGCGCATCCCTG
R:
TCATGGATGACGGCATTGGTG
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]