MmuEX6055217 @ mm9
Exon Skipping
Gene
ENSMUSG00000062185 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82447178-82448062:-
Coord C1 exon
chr15:82447886-82448062
Coord A exon
chr15:82447562-82447703
Coord C2 exon
chr15:82447178-82447365
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCTGCCTGGCCCAGGCC
3' ss Score
6.23
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
GTTCTTAACACGTTCCCAATACTCCTGCGAATCCCAGGGCTGGCTGACATGGTCTTCCAAAGTCAGAAGACCTTCATGGCCATACTGGATAACCTAGTTACTGAGAATAGGACCACCTGGGACCCTGACCAGCCACCCCGAAATTTGGCCGATGCCTTCCTAGCAGAGATACAGAAG
Seq A exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGTGCATGGTGGTGAGTGATCTCTTCACTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGTGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGC
Seq C2 exon
GTAGAGTTCAACAGGAAATCGATGCAGTCATAGGGCAGGTGCGGTGTCCAGAGATGGCAGACCAGGCCCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAACGCTTTGGGGACATTATTCCATTGAATATACCACGCATCACAAGTCGTGACATTGAAGTCCAGGATTTTCTGATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062185-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=75=67%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(1.5=10.7)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTCCTGCGAATCCCAGGG
R:
ACAGCATTGGTGTAGGGCATG
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: