HsaEX0018278 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr22:42141152-42142044:-
Coord C1 exon
chr22:42141868-42142044
Coord A exon
chr22:42141534-42141675
Coord C2 exon
chr22:42141152-42141339
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTCGGCCCTGCTCAGGCC
3' ss Score
5.07
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
GTGCTGAATGCTGTCCCCGTCCTCCCGCACATCCCAGCGCTGGCTGGCAAGGTCCTACGCTTCCAAAAGGCTTTCCTGACCCAGCTGGATGAGCTGCTAACTGAGCACAGGATGACCTGGGACCCAGCCCAGCCACCCCGAGACCTGACTGAGGCCTTCCTGGCAAAGAAGGAGAAG
Seq A exon
GCCAAGGGGAGCCCTGAGAGCAGCTTCAATGATGAGAACCTGCGCATAGTGGTGGGTAACCTGTTCCTTGCCGGGATGGTGACCACCTCGACCACGCTGGCCTGGGGCCTCCTGCTCATGATCCTACACCTGGATGTGCAGC
Seq C2 exon
TCCGTGTCCAACAGGAGATCGACGACGTGATAGGGCAGGTGCGGCGACCAGAGATGGGTGACCAGGCTCACATGCCCTGCACCACTGCCGTGATTCACGAGGTGCAGCACTTTGGGGACATCGTCCCCCTGGGTGTGACCCATATGACATCCCGTGACATCGAAGTACAGGGCTTCCGCATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205702_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=75%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGTCCTACGCTTCCAAA
R:
AAAGTGCTGCACCTCGTGAAT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development