HsaEX0018278 @ hg19
Exon Skipping
Gene
ENSG00000205702 | CYP2D7P1
Description
cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1 [Source:HGNC Symbol;Acc:2624]
Coordinates
chr22:42537162-42538054:-
Coord C1 exon
chr22:42537878-42538054
Coord A exon
chr22:42537544-42537685
Coord C2 exon
chr22:42537162-42537349
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCCTCTCGGCCCTGCTCAGGCC
3' ss Score
5.07
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
GTGCTGAATGCTGTCCCCGTCCTCCTGCACATCCCAGCGCTGGCTGGCAAGGTCCTACGCTTCCAAAAGGCTTTCCTGACCCAGCTGGATGAGCTGCTAACTGAGCACAGGATGACCTGGGACCCAGCCCAGCCACCCCGAGACCTGACTGAGGCCTTCCTGGCAAAGAAGGAGAAG
Seq A exon
GCCAAGGGGAGCCCTGAGAGCAGCTTCAATGATGAGAACCTGCGCATAGTGGTGGGTAACCTGTTCCTTGCCGGGATGGTGACCACCTTGACCACGCTGGCCTGGGGCCTCCTGCTCATGATCCTACACCTGGATGTGCAGC
Seq C2 exon
TCCGTGTCCAACAGGAGATCGACGACGTGATAGGGCAGGTGCGGCGACCAGAGATGGGTGACCAGGCTCACATGCCCTACACCACTGCCGTGATTCACGAGGTGCAGCGCTTTGGGGACATCATCCCCCTGAGTGTGACCCATATGACATCCCATGACATCGAAGTACAGGGCTTCCGCATCCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205702_MULTIEX1-5/6=4-6
Average complexity
S*
Mappability confidence:
93%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006717=p450=PU(29.7=97.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGCTTTCCTGACCCAGC
R:
ATATGGGTCACACTCAGGGGG
Band lengths:
258-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)