DreEX0025474 @ danRer10
Exon Skipping
Gene
ENSDARG00000018485 | cyp2v1
Description
cytochrome P450, family 2, subfamily V, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040912-139]
Coordinates
chr20:25635962-25662730:+
Coord C1 exon
chr20:25635962-25636148
Coord A exon
chr20:25657679-25657820
Coord C2 exon
chr20:25662586-25662730
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGTTTTTTTACAGAAG
3' ss Score
10.39
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGACTGAAATGCGAAAAGGAGCAGGAGCGTAAGTGAACCAAATCTCGCCCTCCAAACTGGGTTCCTCTCCTGGACATTTGGAGAGGGTGAACTGCTGCAGCAGAGAGGTGAAGAAGAGGAAGAGCACATTACGAGCCAGCAGCTCTCCGACACAAGCTCTTTTACCTGCAAACAAATGGAATAAAAG
Seq A exon
AAGAAAGATGATTTGGAAGCAGGATTTCATGATGAGGGTCTGCAATATGCCGTTCTTGATTTGTTTGTGGCAGGAACTGAGACCACATCTACCACTCTACTGTGGGCCTTTGTGTACATGATGAAATATCCAGAAATCCAAG
Seq C2 exon
GGCACTCTTGTGATTGGCAGTTTGACATCAGTGCTGTTTGATGAGTCTGAGTGGGAGACGCCTCACTCTTTTAACCCGGGTCACTTCCTGGATGCTGAGGGCAAATTCAGGAGGAGAGATGCCTTTTTACCTTTTTCTCTAGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018485_MULTIEX1-6/8=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0006717=p450=FE(10.3=100)
C2:
NA
Main Inclusion Isoform:
ENSDART00000016501fB2171
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAGCGTAAGTGAACCAA
R:
CCCGGGTTAAAAGAGTGAGGC
Band lengths:
247-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]