RnoEX6033243 @ rn6
Exon Skipping
Gene
ENSRNOG00000008988 | Cyp2d2
Description
cytochrome P450, family 2, subfamily d, polypeptide 2 [Source:RGD Symbol;Acc:2471]
Coordinates
chr7:123652649-123653520:-
Coord C1 exon
chr7:123653344-123653520
Coord A exon
chr7:123653024-123653165
Coord C2 exon
chr7:123652649-123652836
Length
142 bp
Sequences
Splice sites
3' ss Seq
AGCCCTTTCTGCCTGTCCAGGCC
3' ss Score
7.92
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
Exon sequences
Seq C1 exon
GTGCTGAACGCAATCCCAATTCTCCTTCAGATTCCTGGGCTGCCTGGCAAAGTCTTCCCCAAGCTCAATTCATTTATAGCCTTAGTGGATAAGATGTTAATTGAGCACAAGAAAAGCTGGGATCCTGCCCAGCCGCCCCGAGACATGACTGATGCCTTCCTAGCAGAGATGCAAAAG
Seq A exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAAAATCTGCGCTTGGTGGTGATTGACCTGTTCATGGCGGGGATGGTGACCACCTCAACCACACTGTCCTGGGCCCTTCTGCTCATGATCCTGCATCCAGATGTGCAGC
Seq C2 exon
GCCGAGTCCACGAGGAGATTGATGAGGTCATAGGGCAGGTGCGTCGTCCAGAGATGGCAGACCAGGCACGAATGCCGTTCACCAATGCTGTCATCCATGAGGTGCAGCGCTTTGCAGACATCGTCCCGACAAATATACCACATATGACATCCCGAGACATTAAATTCCAAGGCTTCCTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008988-'5-10,'5-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.153 A=0.042 C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.6=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCAAAGTCTTCCCCAAG
R:
CTGCACCTCATGGATGACAGC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]